GgaEX0022626 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54564471-54566437:-
Coord C1 exon
chrZ:54566235-54566437
Coord A exon
chrZ:54565468-54565516
Coord C2 exon
chrZ:54564471-54564584
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACTTACCATGGTCTTTCAGATC
3' ss Score
9.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTCTCTGCAATTTCAAATCTCATTACAAAACACGTCCCTGAGGCAAGACTGGTTGAGGACATTGGTCATGAGTTAACCTATGTCTTGCCATACAAAGCTGCTAAAGAGGGAGCTTTCGTCGAGCTGTTCCATGAAATTGATGATCGCCTTTCTGATCTTGGCATTTCCAGCTATGGCATTTCTGAGACCACCTTGGAGGAG
Seq A exon
ATCTTCCTCAAAGTGGCTGATGATAGCGGTGTGGATGCAGAAACCTCAG
Seq C2 exon
ATGGGACATTGCCTGCCAGAAGGAACAGGCGTGCATTTGGAGACAGACAGAGCTGCCTTCGTCCATTTACAGAAGATGATGCATTTGACCCTAATGATTCAGACATTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCGTCGAGCTGTTCCAT
R:
TGTCTGTCTCCAAATGCACGC
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]