BtaEX6035686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96303549-96305189:-
Coord C1 exon
chr8:96304987-96305189
Coord A exon
chr8:96303852-96303900
Coord C2 exon
chr8:96303549-96303662
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTCTCATTTTTCAGATA
3' ss Score
11.95
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGTCTCTGTGATCTCCAACCTCATCAGGAAGCATGTGGCTGAGGCCCGGCTGGTGGAAGACATTGGGCATGAGCTGACCTACGTGCTGCCCTACGAGGCTGCCAGAGAGGGAGCCTTTGTGGAACTCTTCCATGAAATTGATGACCGGCTCTCAGACCTAGGCATCTCCAGTTACGGCATCTCAGAGACTACTCTGGAAGAA
Seq A exon
ATATTTCTCAAAGTGGCTGAAGAGAGTGGAGTGGATGCCGAGACCTCAG
Seq C2 exon
ATGGCACCTTACCAGCAAGACGAAACAGACGAGTCTTTGGGGACAAGCAGAGCTGTCTTCGCCCTTTTACTGAAGACGATGCTATGGATCCAAATGATTCTGACATAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCCTTTGTGGAACTCT
R:
TGTCCCCAAAGACTCGTCTGT
Band lengths:
140-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]