RnoEX6021845 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69892287-69894517:-
Coord C1 exon
chr5:69894315-69894517
Coord A exon
chr5:69892585-69892633
Coord C2 exon
chr5:69892287-69892400
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATCCTGCCTTAATTTTTCAGATA
3' ss Score
9.91
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGTCTCTGCTATCTCCAACCTCATCAGGAAACATGTGTCCGAAGCCCGGCTGGTGGAGGACATTGGGCACGAACTGACCTATGTGCTGCCGTACGAAGCTGCTAAGGAGGGAGCCTTTGTGGAGCTCTTCCACGAGATTGATGACCGCCTCTCAGACCTGGGCATCTCCAGTTACGGCATCTCAGAGACCACCCTAGAAGAA
Seq A exon
ATATTCCTCAAAGTGGCTGAAGAGAGTGGGGTGGATGCTGAGACCTCAG
Seq C2 exon
ACGGTACTTTGCCAGCAAGACGAAACAGACGGGCCTTCGGTGACAAGCAGAGCTGTCTGCACCCATTTACAGAGGACGATGCTGTGGATCCGAATGACTCTGACCTAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'35-36,'35-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGATTGATGACCGCCTC
R:
AAATGGGTGCAGACAGCTCTG
Band lengths:
140-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]