MmuEX6093486 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53069792-53072025:-
Coord C1 exon
chr4:53071823-53072025
Coord A exon
chr4:53070076-53070124
Coord C2 exon
chr4:53069792-53069905
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATCCTGCTTTAATTTCTCAGATA
3' ss Score
8.21
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATGTCTCTGCTATCTCCAACCTCATCAGGAAGCACGTGTCTGAAGCCCGGCTGGTGGAGGACATTGGGCACGAGCTGACCTATGTGCTGCCGTACGAAGCCGCGAAGGAGGGAGCCTTTGTGGAACTCTTCCATGAGATTGATGACCGGCTCTCAGACCTGGGCATCTCCAGTTATGGCATCTCGGAGACCACCCTGGAAGAA
Seq A exon
ATATTCCTCAAAGTGGCTGAAGAGAGCGGGGTGGATGCTGAGACCTCAG
Seq C2 exon
ATGGTACTTTGCCAGCAAGACGAAACAGACGGGCCTTCGGGGACAAGCAGAGCTGTCTGCACCCATTTACGGAAGATGATGCTGTTGATCCCAATGACTCTGACATAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'37-41,'37-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGTGCTGCCGTACGAAG
R:
TCGTCTTGCTGGCAAAGTACC
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types