GgaEX0022626 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53616965-53618931:-
Coord C1 exon
chrZ:53618729-53618931
Coord A exon
chrZ:53617962-53618010
Coord C2 exon
chrZ:53616965-53617078
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACTTACCATGGTCTTTCAGATC
3' ss Score
9.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTCTCTGCAATTTCAAATCTCATTACAAAACACGTCCCTGAGGCAAGACTGGTTGAGGACATTGGTCATGAGTTAACCTATGTCTTGCCATACAAAGCTGCTAAAGAGGGAGCTTTCGTCGAGCTGTTCCATGAAATTGATGATCGCCTTTCTGATCTTGGCATTTCCAGCTATGGCATTTCTGAGACCACCTTGGAGGAG
Seq A exon
ATCTTCCTCAAAGTGGCTGATGATAGCGGTGTGGATGCAGAAACCTCAG
Seq C2 exon
ATGGGACATTGCCTGCCAGAAGGAACAGGCGTGCATTTGGAGACAGACAGAGCTGCCTTCGTCCATTTACAGAAGATGATGCATTTGACCCTAATGATTCAGACATTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'33-48,'33-47,35-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCGTCGAGCTGTTCCAT
R:
TGTCTGTCTCCAAATGCACGC
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]