BtaEX6016555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50086132-50095603:-
Coord C1 exon
chr3:50095509-50095603
Coord A exon
chr3:50087612-50087760
Coord C2 exon
chr3:50086132-50086290
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATATAATTTTGTTTTATAGTCC
3' ss Score
6.86
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCTTGGCTCTCTGAAGTTGAAGGCAAAACAGGTGGAAGAGGAGACAGAAGACATAGCAGTGACATAAATCATCTTGTAACACAGGGACGAGAAAG
Seq A exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAAGAAGTTCGTGGACCACCCCAACAGCATGGCCACCACAGTGAGTTTGATGATGAGTTTGAAGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq C2 exon
GACATAATGAAGGCACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAGGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACATCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383-'19-28,'19-26,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.902 C2=0.889
Domain overlap (PFAM):
C1:
PF103924=COG5=PD(9.1=28.1),PF127872=EcsC=PD(23.2=81.2),PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTCTGAAGTTGAAGGC
R:
AGAGTTACATCTATGTATGATGTGGG
Band lengths:
234-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]