HsaEX6032160 @ hg19
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:94012904-94016662:+
Coord C1 exon
chr1:94012904-94012998
Coord A exon
chr1:94014835-94014983
Coord C2 exon
chr1:94016504-94016662
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATAATTTTTTGTTTTATAGTCC
3' ss Score
7.07
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCTTGGCTCTCTGAAGTCGAAGGCAAAACAGGTGGGAGAGGAGACAGAAGACATAGCAGTGACATAAATCATCTTGTAACACAGGGACGAGAAAG
Seq A exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCACAATGAGTTTGATGATGAATTTGAGGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq C2 exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.868 C2=0.776
Domain overlap (PFAM):
C1:
PF127872=EcsC=PD(19.8=81.2),PF103924=COG5=PD(10.3=28.1),PF143891=Lzipper-MIP1=PD(11.8=31.2),PF154561=Uds1=PD(10.3=28.1),PF0218511=HR1=PD(3.1=6.2)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCTCTCTGAAGTCGAA
R:
AGTTACATCTATGTATGACGTGGGA
Band lengths:
235-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)