GgaEX1025318 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14566029-14567295:-
Coord C1 exon
chr8:14567201-14567295
Coord A exon
chr8:14566570-14566718
Coord C2 exon
chr8:14566029-14566187
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGCAATCATTGCATTATAGCCC
3' ss Score
3.49
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GCCTGGCTCTCTGAAGTTGAAGGAAAAGTAGCAGCCAGAACTGACAGGCGACACAGCAGTGATATCAACCACCTTGTAACACAGGGCAGAGAGAG
Seq A exon
CCCTGAAGGGAGTTACACGGATGATGCAAATCAGGAAGTCCGAGGCCCACCACAGCAGCACGCACATCCAAATGAGTTTGACGATGAGTTTGAAGATGATGATCCATTACCAGCTATAGGGCATTGCAAGGCAATATATCCTTTTGATG
Seq C2 exon
GTCATAATGAAGGCACTCTAGCAATGAAAGAAGGGGAAATTTTGTACATTATTGAGGAGGACAAAGGAGATGGGTGGACAAGAGCTCGAAGACAAAATGGAGAGGAAGGCTATGTACCAACATCTTATATAGATGTAACACTAGAGAAAAACAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'19-28,'19-27,20-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=0.843 C2=0.741
Domain overlap (PFAM):
C1:
PF103924=COG5=PD(14.3=40.6),PF143891=Lzipper-MIP1=PD(13.8=37.5),PF154561=Uds1=PD(15.2=43.8),PF0218511=HR1=PD(0.1=0.0)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCTCTCTGAAGTTGAA
R:
TGCTGTTTTTCTCTAGTGTTACATCT
Band lengths:
251-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]