RnoEX6011382 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226691455-226696200:-
Coord C1 exon
chr2:226696106-226696200
Coord A exon
chr2:226693927-226694075
Coord C2 exon
chr2:226691455-226691613
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATACTTTAATGGTTTTTAGCCC
3' ss Score
4.12
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCATGGCTCTCTGAAGTGGAAGGCAAAACAGGTGTGAGAGGAGACAGAAGACACAGCAGTGACATAAACCATCTCGTGACACAGGGGCGAGAAAG
Seq A exon
CCCTGAGGGAAGTTATACTGATGATGCAAACCAAGAAGTTCGTGGGCCACCGCAACAACATGGTCACCACAGTGAGTTTGATGACGAGTTTGAAGATGATGATCCCCTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq C2 exon
GGCACAATGAAGGTACTCTGGCAATGAAAGAAGGGGAGGTGCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCCCGGAGACAGAACGGCGAAGAAGGCTACGTTCCCACAACATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.850 C2=0.796
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGCTCTCTGAAGTGGAA
R:
AGTTACATCTATGTATGTTGTGGGA
Band lengths:
235-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]