MmuEX6073854 @ mm10
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122538725-122546394:-
Coord C1 exon
chr3:122546300-122546394
Coord A exon
chr3:122544544-122544692
Coord C2 exon
chr3:122538725-122542283
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATACTTTAATGGTTTTTAGCCC
3' ss Score
4.12
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCATGGCTCTCTGAAGTTGAAGGCAAAACAGGTATAAGAGGTGACAGAAGACACAGCAGTGACATAAATCATCTTGTGACACAGGGACGAGAAAG
Seq A exon
CCCTGAGGGAAGTTACACTGATGATGCAAACCAAGAAGTTCGTGGGCCACCCCAACAACATGGCCACCACAGTGAGTTTGATGATGAGTTCGAAGATGATGATCCCCTGCCTGCTATTGGACACTGCAAAGCAATCTACCCTTTTGATG
Seq C2 exon
GGCATAATGAAGGTACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACAACATACATAGATGTTACTCTAGAGAAAAGCAGTAAAGGTGCAGTAACTTATATCTAACTAACAGGCAGTGTGTGCCATGTACACGTAAAACGACAACACAGTCAACAGTCAGAAACGCAAGCGTTAAGGCATCCTGATGCGTTGTTCACTATGTGAGCTGAGTGCAGGCTGGATCAGAGTGTGAATACTGCCACCAGAAACTCTTTGACGCCTTACTGTTCAAGTGATGCTGGTGTGGAAGCTTAATCGATGCCTTTTGCTTTCTGTCCTGCCTAAGTGTGTGTAAAGGATGTGTGCTTTTTCTGCCTTATAAATAATAGATTTGATTATTAGGCGAGAATCATAGGTAGAATGTTTCCTGCCCCCTGCACCTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.829 C2=0.550
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGACACAGGGACGAGA
R:
TGACTGTTGACTGTGTTGTCGT
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types