DreEX0033200 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15034523-15040837:+
Coord C1 exon
chr8:15034523-15034617
Coord A exon
chr8:15036372-15036514
Coord C2 exon
chr8:15040412-15040837
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTCGTTCAGTCC
3' ss Score
9.51
5' ss Seq
ATGGTACAA
5' ss Score
2.37
Exon sequences
Seq C1 exon
AGCTGGTTAGCAGAGGTGGAAGGAAAGCATGGATCTCGAAGTGAGCGGCGGTCCAGTGCAGATGTAAACCATCACGCTCCGCACGGAAGAGAGAG
Seq A exon
TCCTGAAGGCAGTTATACAGATGATCACAGTCAGGAGCATCGGTCTCCGCCACAGCCGGACCCTCACGAATTTGATGACGAGTTTGATGATGACGATCCACTCCCTGCCATCGGCCACTGCAAAGCTCTCTACTCTTTTGATG
Seq C2 exon
GATCTAATGAAGGCACATTAGTGATGAACGAGAACGAGGTGTTATACGTCATAGAGGAGGATAAAGGAGATGGCTGGACACGGGTTCGGAAAAATAGCGGAGAGGAGGGTTACGTCCCCACATCCTACGTGGAGATCACAATGGAGAAAAACAGCAAAGGTGCGGTCACCTACATATGACATCACCTATGCCTGCCATGACATCACACATGAGGAGCGTGTGTCAGATTTACCGTGACTCATCAAGCGCAGCTCGGCTGACTGCCATATGATTTTGTTCACTGTGTGAGCTCAAGGACAAACACACACACACACACACACACACTGTCTGAAGTGACTTTACCCTCTCTGCACTGCGGCACAGTGGATCAATCTGTAGAACTGTAGAGATTTTTATGAGCTTTTTTAATAAATGTTTTTAATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.827 C2=0.675
Domain overlap (PFAM):
C1:
PF039618=DUF342=PD(25.6=93.8),PF143891=Lzipper-MIP1=PD(10.7=28.1),PF0218511=HR1=PD(3.1=6.2)
A:
PF146041=SH3_9=PU(11.8=12.2)
C2:
PF146041=SH3_9=PD(86.3=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCCAGTGCAGATGTAAA
R:
GTGTGATGTCATGGCAGGCAT
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]