HsaEX6032160 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93547347-93551105:+
Coord C1 exon
chr1:93547347-93547441
Coord A exon
chr1:93549278-93549426
Coord C2 exon
chr1:93550947-93551105
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATAATTTTTTGTTTTATAGTCC
3' ss Score
7.07
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCTTGGCTCTCTGAAGTCGAAGGCAAAACAGGTGGGAGAGGAGACAGAAGACATAGCAGTGACATAAATCATCTTGTAACACAGGGACGAGAAAG
Seq A exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCACAATGAGTTTGATGATGAATTTGAGGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq C2 exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'36-45,'36-42,39-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.878 C2=0.820
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(10.3=28.1),PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
A:
PF0001823=SH3_1=PU(14.6=13.7)
C2:
PF0001823=SH3_1=PD(83.3=66.7)
Main Skipping Isoform:
ENST00000271234fB15826
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCTCTCTGAAGTCGAA
R:
AGTTACATCTATGTATGACGTGGGA
Band lengths:
235-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains