BtaEX6016629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047443 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr3:51575233-51577157:-
Coord C1 exon
chr3:51577029-51577157
Coord A exon
chr3:51576013-51576201
Coord C2 exon
chr3:51575233-51575405
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGTGTCATTTTCCATTATAGGAT
3' ss Score
9.93
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GCAAAAATGGATAACCAGGAATATAAAGATGCATATGAATTTGCTGCAGATGTTAGATTAATGTTCATGAACTGCTATAAGTACAACCCTCCAGACCATGAAGTGGTTACAATGGCAAGGATGCTGCAG
Seq A exon
GATGTTTTCGAAATGCATTTTGCAAAGATCCCAGATGAACCTGTTGAGAGTATGCCTGTATGTTACGTCAAAACAGATACCACAAAAACCCTTGGTAGAGAAAGCAGTAGTGAAGCTTCTTCTGAAGATAACTCTTCTGGTGATTCTGAAGATGAACGAGTTCAGCGTCTTGCAAAGCTTCAGGAGCAG
Seq C2 exon
CTTCAAGCTGTTCATCAACAGCTACAGGTTTTGTCCCAAGTACCTTTTCGTAAGCTAAAGAGAAAGAATGAGAAGTCTAAAAGGGAAAAGAAAAAAGAAAAGATTGATAACAGAGATGAAAATCCAAGGAAAAAGTTTAAGCAAATGAAACTAAAGGAAAAATCCAAGCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047443-'8-10,'8-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.508 C2=0.757
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGATGTTAGATTAATGTTCA
R:
GCGCTTGGATTTTTCCTTTAGT
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]