GgaEX6044273 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13252139-13254104:-
Coord C1 exon
chr8:13253976-13254104
Coord A exon
chr8:13253598-13253786
Coord C2 exon
chr8:13252139-13252320
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCTAAACAAAATTCTTTAGGAT
3' ss Score
5.38
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAAAAATGGATAATTTTGAATATAGAGATATACAAGAATTTGCCACAGATGTTAGACTAATGTTCATGAATTGCTACAAACGTAATTCTCCAGACCATGAAGTGGTTGCCATGGCAAAAAAACTTCAG
Seq A exon
GATGTTTTTGAGACTCACTTTGCCAAAATTCCTGATGAACCAGCTACAAGTATTCTTCTGCCACAGCACACAAGGGAAATTACAAAAGCTTATTCCAGTGACAGCAGCAGTGATGATTCTTCAGAAGAAAAATCATCTGAAGACTTTGAAAAGGAGAGAACAGTGTACCTTGCAAAGCTTCAGGAGCAG
Seq C2 exon
CTTAAAGCTGTTCACCAGCAGTTGCAGGCTTTGACCAGAGCATCCTTACCTAGATTGAAAAGGAAAAAAGAGAAAGCTAAAAGAGAAAAGGGGGAGAACAAGGAAAAAGCTAAAGCAAGCCTGATTCGAAAGAAGAAAGATCTAAAACACAAGAAGTCTAAGAAAAAGCAGTCTTCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.492 C2=0.902
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATATACAAGAATTTGCCACAGA
R:
TTCTTCTTTCGAATCAGGCTTGCT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]