RnoEX0015174 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3429688-3432315:-
Coord C1 exon
chr14:3432187-3432315
Coord A exon
chr14:3431200-3431388
Coord C2 exon
chr14:3429688-3429857
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGGTTAATTTTCCATTATAGGAC
3' ss Score
8.62
5' ss Seq
CAGGTGGCC
5' ss Score
3.48
Exon sequences
Seq C1 exon
GGGAAAATGGACAAGCAAGAGTATAAGGATGCGTGTGAATTTGCTGCAGATGTCAGGCTGATGTTTATGAATTGCTACAAGTACAACCCTCCTGATCATGAAGTTGTGACCATGGCCAGGATGCTTCAG
Seq A exon
GACGTTTTTGAAATGCATTTTGCCAAGATTCCTGATGAACCTGTTGAGAGTATGCGTGCATGTCACCTTACAACAAACAGTGCAAAAGCCCTCAGTAGAGAAAGCAGCAGCGAGGCCTCCTCGGGGGACTGCTCTTCCGAAGACTCTGAGGACGAGCGAGTACAGCGTCTTGCCAAGCTTCAGGAGCAG
Seq C2 exon
CTTAATGCTGTTCATCAGCAACTACAAGTTCTGTCCCAAGTTCCATTACGTAAGCTGAAGAAAAAGAATGAGAAGTCTAAAAGGGCACCCAAAAGGAAAAAGGTTAACAGAGACGAGAACCCAAAGAAAAAGGCTAAGCAAATGAAGCAAAAGGAGAAGGCCAAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.730 C2=0.895
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTGCAGATGTCAGGCT
R:
TGGCCTTCTCCTTTTGCTTCA
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]