MmuEX6019340 @ mm9
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107785771-107788028:+
Coord C1 exon
chr5:107785771-107785899
Coord A exon
chr5:107786766-107786954
Coord C2 exon
chr5:107787856-107788028
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGGTTAATTTTGCATTATAGGAT
3' ss Score
7.01
5' ss Seq
CAGGTGGCC
5' ss Score
3.48
Exon sequences
Seq C1 exon
GGGAAAATGGACAATCAAGAATATAAGGATGCATATGAATTTGCTGCAGATGTCAGACTGATGTTCATGAACTGTTACAAGTATAATCCTCCCGATCATGAAGTTGTGGCGATGGCTCGGACCCTTCAG
Seq A exon
GATGTTTTTGAACTACATTTTGCCAAGATTCCCGATGAACCTATTGAGAGTATGCATGCATGCCACCTTACAACAAACAGTGCACAAGCCCTCAGCAGAGAAAGCAGCAGCGAGGCCTCCTCGGGGGACGCCTCTTCTGAAGACTCTGAGGATGAACGAGTGCAGCATCTTGCCAAGCTTCAGGAGCAG
Seq C2 exon
CTTAATGCTGTTCATCAGCAGCTGCAAGTTCTGTCCCAAGTTCCATTACGTAAGCTGAAGAAAAAGAATGAGAAGTCCAAAAGGGCGCCAAAAAGGAAAAAGGTTAATAACAGAGATGAAAACCCAAGGAAAAAGCCTAAGCAAATGAAGCAAAAGGAGAAGGCCAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.730 C2=0.931
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGATGTCAGACTGATGT
R:
TGGCCTTCTCCTTTTGCTTCA
Band lengths:
253-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: