BtaEX6016634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003724 | BRDT
Description
Bos taurus bromodomain, testis-specific (BRDT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075852]
Coordinates
chr3:51551120-51555264:-
Coord C1 exon
chr3:51555158-51555264
Coord A exon
chr3:51551816-51552021
Coord C2 exon
chr3:51551120-51551294
Length
206 bp
Sequences
Splice sites
3' ss Seq
GAATCAAATATTTGTTTTAGGAT
3' ss Score
7.25
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
ATGATTCTGAACAACTTCTGAATGGCCTAACTGTGATGCCTCAGTCCAGTGATAATGACACAGTGATGTTAGAATCAGAATATCAAGGTCAAGTTCCAGTGCAAAAG
Seq A exon
GATATAAAGATCAAGAATGCAGATTCTTGGAAAAGTTTAGGCAAACCGGTCAAAACATCAGGTGTACTGAAATCATCAGATGAGCTCTTCAACCAGTTTAGAAAAGCAGCAATAGAAAAGGAAGTAAGAGCTCGAACACAGGAACTAATACGGAAACATCTGGAACAGAATACAAAGGAACCAAAAGTATTTCAAGAAAATCAGAG
Seq C2 exon
GGACCATGGCTTCACTCTAGAATCTTTTCCAAATAAAATGCAAAACAAGTGTCTTGAAGAAGAACAAAAAGAAGATCAGCAGTCACAGGAAGCTCAAGATAAAGACAAACTGTGGCTTCTGAAAGACCGAAATTTAGCACGGGAGAAAGAGCAAGAGCGGAGGAGAAGAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003724-'5-4,'5-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.449 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACAACTTCTGAATGGCCT
R:
GCTTCTCTTCTCCTCCGCTCT
Band lengths:
276-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]