HsaEX6032088 @ hg38
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:92002049-92014421:+
Coord C1 exon
chr1:92002049-92002149
Coord A exon
chr1:92004414-92004619
Coord C2 exon
chr1:92014206-92014421
Length
206 bp
Sequences
Splice sites
3' ss Seq
GAACCAAATATTTGTTTTAGGAT
3' ss Score
7.48
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTGATTCTGAACAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAGTGACACAACGATGTTAGAATCTGAATGTCAAGCTCCTGTACAGAAG
Seq A exon
GATATAAAGATTAAGAATGCAGATTCATGGAAAAGTTTAGGCAAACCAGTGAAACCATCAGGTGTAATGAAATCCTCAGATGAGCTCTTCAACCAATTTAGAAAAGCAGCCATAGAAAAGGAAGTAAAAGCTCGGACACAGGAACTCATACGGAAGCATTTGGAACAAAATACAAAGGAACTAAAAGCATCTCAAGAAAATCAGAG
Seq C2 exon
ATGGTGGGTACCATTGATATGACCCTTCAAAGTGACATTATGACAATGTTTGAAAACAACTTTGATTAAAACTCAGTTTTTAAATTAACCATCAACTTAAAATGAATGGTAAAAGATCAAAATGCATATGGTAAAATGATTGCTTTCAGATAACAAGATACCAATCTTATATTGTATTTTGACTGCTCTAAAATGATTAAACAGTTTTCACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948_MULTIEX1-21/22=20-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.667 C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACAGCTCTCAAATGGCA
R:
ACTGTTTAATCATTTTAGAGCAGTCA
Band lengths:
301-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains