DreEX6021805 @ danRer10
Exon Skipping
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24270233-24271057:-
Coord C1 exon
chr6:24270990-24271057
Coord A exon
chr6:24270718-24270911
Coord C2 exon
chr6:24270233-24270431
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCTTGTGTATTTAAGGAT
3' ss Score
10.15
5' ss Seq
CTGGTAATA
5' ss Score
4.88
Exon sequences
Seq C1 exon
GAGCTAAACATGATGACAACGAGCTATGCAAGTCTATTCAAGATGCCAAATCCAACTTGCCTAAAAAG
Seq A exon
GATATTGTTCTGAAGCATGCTGACTCTTGGACGAGCCTTGGTAAGCTGGCTACTCAAACTCCTTGCACCATCAAATCATCCAAGGAAAGTTTCCAGCAGTTTCGCAAAGTTGCCATGGAAAAAGAGGAGCGGGAGAGAGCTCGAAAGCTGCAGTTGGAGGCTGGTAGAGAGAAGAGCAGCACAGACAAAAGCTG
Seq C2 exon
TTTGACGCAGCAGCCCCAGAAGGCTAAGCTGGAGTGCCAGCCTTCAAAGCCAGAAGTGGAGTCAGCAGAGTTGCCTCTGATGGCGGCCATCTTGGACACCCCCAAAGCCCCTGAGCCCAGTTCTGTTCTGCAGAACTCTGTTGACCGAGAACGAGAGATGGCACGCAAGAGAGAACAAGAGCGCCGCAGGAGAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802-'29-31,'29-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.581 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGATGACAACGAGCTATGCA
R:
CGCTCTTGTTCTCTCTTGCGT
Band lengths:
244-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]