HsaEX6032088 @ hg19
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92467606-92470856:+
Coord C1 exon
chr1:92467606-92467706
Coord A exon
chr1:92469971-92470176
Coord C2 exon
chr1:92470676-92470856
Length
206 bp
Sequences
Splice sites
3' ss Seq
GAACCAAATATTTGTTTTAGGAT
3' ss Score
7.48
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTGATTCTGAACAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAGTGACACAACGATGTTAGAATCTGAATGTCAAGCTCCTGTACAGAAG
Seq A exon
GATATAAAGATTAAGAATGCAGATTCATGGAAAAGTTTAGGCAAACCAGTGAAACCATCAGGTGTAATGAAATCCTCAGATGAGCTCTTCAACCAATTTAGAAAAGCAGCCATAGAAAAGGAAGTAAAAGCTCGGACACAGGAACTCATACGGAAGCATTTGGAACAAAATACAAAGGAACTAAAAGCATCTCAAGAAAATCAGAG
Seq C2 exon
GGATCTTGGGAATGGATTGACTGTAGAATCTTTTTCAAATAAAATACAAAACAAGTGCTCTGGAGAAGAGCAGAAAGAACATCAGCAGTCATCAGAAGCTCAAGATAAATCCAAACTCTGGCTTCTCAAAGACCGTGATTTAGCAAGGCAGAAAGAACAAGAGAGGAGGAGGAGAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'36-26,'36-25,37-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.667 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACAGCTCTCAAATGGCA
R:
TGCTTCTCTCCTCCTCCTCTC
Band lengths:
277-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)