MmuEX0008241 @ mm9
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107805284-107807103:+
Coord C1 exon
chr5:107805284-107805381
Coord A exon
chr5:107806029-107806234
Coord C2 exon
chr5:107806923-107807103
Length
206 bp
Sequences
Splice sites
3' ss Seq
ATCAATATTTGTCATTTTAGGAT
3' ss Score
8.49
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTGATTGCAAGCGAGTATTGCTTGGCCCCCCTGTGGTGCACACCTCTGCTGAGAGCCTCACAGTGCTGGAGCCAGAATGCCATGCTCCCGCGCAGAAG
Seq A exon
GATATAAAGATTAAGAATGCAGACTCTTGGAAAAGTTTAGGGAAGCCAGTGAAAGCATCAAGTGTACTGAAGTCTTCAGATGAGCTTTTCAACCAGTTTAGAAAAGCTGCAATAGAAAAGGAGGTAAAGGCCCGGACACAGGAGCAGATGCGGAAACACCTGGAGCATAATGCGAAGGACCCAAAAGTATCTCAAGAAAATCAGAG
Seq C2 exon
GGAGCCTGGAAGTGGATTGACTCTAGAATCTTTATCAAGTAAAGTGCAAGATAAGTCTCTTGAAGAAGATCAGAGTGAACAGCAGCCACCGTCGGAAGCTCAAGACGTAAGCAAGCTCTGGCTTCTCAAAGACCGGAATCTAGCGAGGGAGAAAGAGCAAGAGCGCAGGAGAAGAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.667 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAGTATTGCTTGGCCC
R:
TTCTCTTCTCCTGCGCTCTTG
Band lengths:
268-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: