RnoEX0015173 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3409972-3411799:-
Coord C1 exon
chr14:3411702-3411799
Coord A exon
chr14:3410861-3411066
Coord C2 exon
chr14:3409972-3410161
Length
206 bp
Sequences
Splice sites
3' ss Seq
AGTCAATATTTGTCATTTAGGAT
3' ss Score
5.62
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTGATTGCAAGCGAGTACTGCACGGGCCCCCTGTGGTGCACGCCTCTGCTGAGAGCCACACAGTGCTGGAGCTGCAATGCCATGCTCCTGTGCAGAAG
Seq A exon
GATATAAAGATTAAGAATGCAGACTCTTGGAAAAGTCTTGGGAAGCCAGTGAAAGCATCAAGTGTGCTGAAATCTTCAGACGAGCTTTTCAACCAGTTTAGAAAAGCTGCGATAGAGAAAGAAGTGAAGGCTCGGACACAGGAGCAGATTCGCAAACACCTGGAACACAGCGCAAAGGACCCGAAAGTGTCTCAAGAGAGCCAGAG
Seq C2 exon
GGAGTTTGGAAGCGGATTCACTCCAGAATCTTCATCAAATAAAGTGCAAGGCAGGTCTCACGGAGAAGAGCAGAGTGAACAGCAGCAGCTGCCGTCCCCATCGGAAACTCAAGACATAAGCAAGCTCTGGCTTCTCAAAGACCGGAATTTGGCGAGGGAGAAAGAGCAAGAGCGTAGGAGAAGAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.696 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGCAAGCGAGTACTGCA
R:
TGCTTCTCTTCTCCTACGCTCT
Band lengths:
287-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]