BtaEX6016735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55232742-55239602:-
Coord C1 exon
chr3:55239526-55239602
Coord A exon
chr3:55236308-55236450
Coord C2 exon
chr3:55232742-55232849
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTTATCTTTTTCAGGAA
3' ss Score
10.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGATTTGAAATTGGATAACTTATTACTAGATACAGAGGGCTTTGTGAAAATTGCTGACTTTGGTCTTTGCAAAGAAG
Seq A exon
GAATGGGATATGGAGACAGAACAAGCACATTTTGTGGCACTCCTGAGTTTCTTGCCCCAGAAGTTTTAACAGAAACATCCTATACAAGGGCTGTAGATTGGTGGGGCCTTGGTGTCCTTATATATGAAATGCTCGTTGGTGAG
Seq C2 exon
TCTCCCTTCCCTGGTGATGATGAAGAGGAGGTCTTCGACAGTATTGTAAATGATGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCAATAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900-'33-29,'33-28,34-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTAGATACAGAGGGCTTTGTGA
R:
CCTTCTCATTATTGAAATGGCTTCTG
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]