GgaEX0008903 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:15878463-15880647:-
Coord C1 exon
chr8:15880571-15880647
Coord A exon
chr8:15879915-15880057
Coord C2 exon
chr8:15878463-15878570
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATTAATTGTAACCTTTCAGGAA
3' ss Score
7.52
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGATTTGAAGTTGGATAACTTATTGCTGGACACGGAAGGCTTTGTGAAAATAGCTGACTTTGGTCTTTGCAAAGAAG
Seq A exon
GAATGGGATTTGGAGACAGAACAAGCACATTCTGTGGCACACCAGAATTCCTTGCTCCAGAGGTGCTGACAGAAACTTCCTATACAAGAGCTGTAGACTGGTGGGGTCTTGGTGTCCTTATCTATGAGATGCTTGTGGGTGAG
Seq C2 exon
TCTCCTTTCCCTGGAGATGATGAAGAAGAAGTGTTTGACAGTATTGTAAACGATGAAGTAAGATATCCACGATTTCTGTCTACAGAAGCCATCTCTATAATGAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAACTTATTGCTGGACACGG
R:
CGTCTCATTATAGAGATGGCTTCTGT
Band lengths:
173-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]