RnoEX0066443 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248738560-248744133:-
Coord C1 exon
chr2:248744057-248744133
Coord A exon
chr2:248743158-248743300
Coord C2 exon
chr2:248738560-248738667
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGAATTTAACTTCTTCAGGAA
3' ss Score
6.02
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGACTTGAAGTTGGATAACCTGTTGCTGGATACAGAAGGCTTCGTGAAGATTGCTGACTTTGGTCTTTGCAAAGAAG
Seq A exon
GAATGGGGTATGGAGATAGGACAAGCACATTTTGTGGTACTCCTGAATTTCTTGCCCCAGAAGTATTAACAGAAACGTCGTACACAAGGGCTGTAGATTGGTGGGGCCTTGGCGTACTTATATATGAAATGCTCGTCGGAGAG
Seq C2 exon
TCTCCCTTTCCTGGTGATGATGAAGAAGAGGTTTTTGACAGTATTGTAAATGACGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCCATAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'45-36,'45-34,46-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGATAACCTGTTGCTGGA
R:
CCTTCTCATTATGGAAATGGCTTCTG
Band lengths:
178-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]