MmuEX6074491 @ mm10
Exon Skipping
Gene
ENSMUSG00000004591 | Pkn2
Description
protein kinase N2 [Source:MGI Symbol;Acc:MGI:109211]
Coordinates
chr3:142794388-142799881:-
Coord C1 exon
chr3:142799805-142799881
Coord A exon
chr3:142798903-142799045
Coord C2 exon
chr3:142794388-142794495
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGAATTTATCTTCTTTAGGAA
3' ss Score
7.9
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGATTTGAAGTTGGATAACTTGTTGCTAGATACAGAAGGCTTTGTGAAAATTGCTGACTTTGGTCTTTGCAAAGAAG
Seq A exon
GAATGGGGTATGGAGATAGGACAAGCACATTTTGTGGTACTCCTGAGTTTCTTGCCCCAGAAGTCCTAACAGAAACATCGTACACAAGGGCTGTAGATTGGTGGGGCCTTGGTGTACTTATATATGAGATGCTCGTCGGCGAG
Seq C2 exon
TCTCCCTTTCCTGGTGATGATGAAGAAGAGGTTTTTGACAGTATTGTAAATGACGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCCATAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004591-'59-41,'59-39,60-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTTGTTGCTAGATACAGAAGGCT
R:
CCTTCTCATTATGGAAATGGCTTCTG
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types