DreEX6021835 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25325421-25328454:-
Coord C1 exon
chr6:25328378-25328454
Coord A exon
chr6:25328152-25328294
Coord C2 exon
chr6:25325421-25325528
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCATCTGTCATGCAGGAA
3' ss Score
7.9
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGATTTGAAGCTAGATAACCTTTTGCTAGACACTGAGGGATATGTCAAGATTGCAGATTTCGGTCTCTGCAAAGAAG
Seq A exon
GAATGGGCTTTAAAGACCGTACTAGTACGTTCTGTGGCACTCCTGAGTTCTTGGCACCTGAAGTTTTAACCGAGACGTCGTACACTCGAGCGGTGGACTGGTGGGGTCTCGGAGTGCTCATCTTTGAGATGCTGGTTGGAGAG
Seq C2 exon
TCCCCTTTCCCTGGTGATGATGAAGAGGAGGTGTTTGACAGTATAGTTAATGATGAAGTCCGCTATCCCAAATATCTCTCCACAGAAGCTATTTCCATAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293-'22-19,'22-18,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTGAAGCTAGATAACCTTTTGC
R:
TCATTATGGAAATAGCTTCTGTGGA
Band lengths:
180-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]