GgaEX0008903 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14119741-14121925:-
Coord C1 exon
chr8:14121849-14121925
Coord A exon
chr8:14121193-14121335
Coord C2 exon
chr8:14119741-14119848
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATTAATTGTAACCTTTCAGGAA
3' ss Score
7.52
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGATTTGAAGTTGGATAACTTATTGCTGGACACGGAAGGCTTTGTGAAAATAGCTGACTTTGGTCTTTGCAAAGAAG
Seq A exon
GAATGGGATTTGGAGACAGAACAAGCACATTCTGTGGCACACCAGAATTCCTTGCTCCAGAGGTGCTGACAGAAACTTCCTATACAAGAGCTGTAGACTGGTGGGGTCTTGGTGTCCTTATCTATGAGATGCTTGTGGGTGAG
Seq C2 exon
TCTCCTTTCCCTGGAGATGATGAAGAAGAAGTGTTTGACAGTATTGTAAACGATGAAGTAAGATATCCACGATTTCTGTCTACAGAAGCCATCTCTATAATGAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAACTTATTGCTGGACACGG
R:
CGTCTCATTATAGAGATGGCTTCTGT
Band lengths:
173-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]