BtaEX6018848 @ bosTau6
Exon Skipping
Description
Bos taurus mitochondrial ribosomal protein S15 (MRPS15), mRNA. [Source:RefSeq mRNA;Acc:NM_001192201]
Coordinates
chr3:110016340-110017806:+
Coord C1 exon
chr3:110016340-110016415
Coord A exon
chr3:110017202-110017250
Coord C2 exon
chr3:110017722-110017806
Length
49 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGTTTTTTCCCACAGGGT
3' ss Score
10.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCAGCAAAGCCAAGAAGATGACCCGCCCCCTTCCATGCTGCTGAAGGACTACCAGAATGTCCCTGGAATTGAGAA
Seq A exon
GGTTGATGATGTTGTGAAAAGACTCATATCTTTGGAAATGGCCAACAAG
Seq C2 exon
AAGGAAATGCTAAAAATCAAGAAAGAGCAGCTTATGAGCAAGGTCGTGGAAAACCCGAAGGACACCAGCTCCCTGGAGGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024097-'5-6,'5-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAAGAAGATGACCCGC
R:
CTGGTGTCCTTCGGGTTTTCC
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]