MmuEX1017582 @ mm10
Exon Skipping
Gene
ENSMUSG00000028861 | Mrps15
Description
mitochondrial ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:1913657]
Coordinates
chr4:126048635-126051409:+
Coord C1 exon
chr4:126048635-126048713
Coord A exon
chr4:126050480-126050528
Coord C2 exon
chr4:126051325-126051409
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATTACTCTGGTTTTTTGCAGGGT
3' ss Score
9.54
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TCCAACCCAAGCAGGACGATGAACCACCCTCCTCTGCGTTCATCAAAGAATACAAGGACATCATCCCCAACATAGAGAA
Seq A exon
GGTTGATGATGTTGTGAAAAGAATCTTGTCTTTGGAAATGGCCAGCAGG
Seq C2 exon
AAAGAGAAGTTAAAAATCAAGCAAGAACAATTGATGAACAAGATTGTGGAAAACCCTGAGGATTCCAGAACCTTGGAAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028861-'7-7,'7-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATGAACCACCCTCCTCT
R:
AGGTTCTGGAATCCTCAGGGT
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types