GgaEX1037060 @ galGal4
Exon Skipping
Gene
ENSGALG00000027648 | MRPS15
Description
mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
Coordinates
chr23:3971845-3973649:+
Coord C1 exon
chr23:3971845-3971920
Coord A exon
chr23:3972762-3972810
Coord C2 exon
chr23:3973565-3973649
Length
49 bp
Sequences
Splice sites
3' ss Seq
AATCTTCCTTCTCCTTACAGTGT
3' ss Score
10.59
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ACATCCCCAGCCATTTGGATGATCTCCCTCCAACAATGTTGAAGAAAGATTATGCCAGTATCCCAGTAATAAATAG
Seq A exon
TGTTGACGATGTAGTGAAAAGATTATTGTCACTGGAAATGGCAAACCAG
Seq C2 exon
AGGGACAAAATGAAGATAAAGATACAGCAGCTGGTAGAGAAGGTCAGGAGGTCTCCCAGTGACAATGGCTCCTTTGAGGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027648-'3-4,'3-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=PU(30.2=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTTGGATGATCTCCCTCC
R:
GAGCCATTGTCACTGGGAGAC
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]