RnoEX6023303 @ rn6
Exon Skipping
Gene
ENSRNOG00000008279 | Mrps15
Description
mitochondrial ribosomal protein S15 [Source:RGD Symbol;Acc:1359675]
Coordinates
chr5:144056100-144058775:+
Coord C1 exon
chr5:144056100-144056178
Coord A exon
chr5:144057713-144057761
Coord C2 exon
chr5:144058691-144058775
Length
49 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTTTTTTTTTGCAGGGT
3' ss Score
9.49
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TCCAAGCCAAGCAAGATGATGAACCAGCCTCTTCCACGTTCATCAAAGAATACAAGAACATCATCCCCAACATGGAGAA
Seq A exon
GGTTGATGATGTTGTGAAAAGAATCCTGTCTTTGGAAATGGCCAGCAGG
Seq C2 exon
AAAGAGAAGTTAAAAATCAAGCGAGAACAATTGATGAACAAGATTGCGGAAAACCCTGAGGATTACAGAACCTTGGAGGCTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008279-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTCTTCCACGTTCATC
R:
TTCGAGCCTCCAAGGTTCTGT
Band lengths:
141-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]