DreEX0047442 @ danRer10
Exon Skipping
Gene
ENSDARG00000099429 | mrps15
Description
mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
Coordinates
chr16:36097527-36098038:-
Coord C1 exon
chr16:36097963-36098038
Coord A exon
chr16:36097753-36097801
Coord C2 exon
chr16:36097527-36097611
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTTATGTCATATATTTGCAGGGT
3' ss Score
6.66
5' ss Seq
CATGTACGG
5' ss Score
4.57
Exon sequences
Seq C1 exon
AATTCCCAAGTCAGCTTGAAGATCTGAAAACATCAATGCTGAAGCACGAATATGCGTCCGTCCCACTTGCACAATC
Seq A exon
GGTTGATGATGTGGTGAAGAAACTGCTTACTTTGGAGTTTGCTAATCAT
Seq C2 exon
AGTGAAAAACTGCGTTTGAAAGAGGAACAGCTTATTGCTAAGGTGCAGAGGGATGAGAATGACCGCAGTTCAACCGAAGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099429-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF097844=L31=PU(5.6=15.4)
A:
PF097844=L31=FE(22.2=100)
C2:
PF097844=L31=FE(38.9=100),PF0031217=Ribosomal_S15=PU(48.9=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACATCAATGCTGAAGCACG
R:
TTGACTTCGGTTGAACTGCGG
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]