HsaEX0040173 @ hg19
Exon Skipping
Gene
ENSG00000116898 | MRPS15
Description
mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504]
Coordinates
chr1:36923524-36929451:-
Coord C1 exon
chr1:36929407-36929451
Coord A exon
chr1:36926865-36926913
Coord C2 exon
chr1:36923524-36923582
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTGGTTTATCCACAGGGT
3' ss Score
9.77
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCTCCTCCTCCAGGCCGCGCGCGGATATGTCGTCCGGAAACCAG
Seq A exon
GGTTGATGATGTCGTGAAAAGACTCTTGTCTTTGGAAATGGCCAACAAG
Seq C2 exon
TTATTGCCTTGTCTGTCAAGATCCGCAGTTATGAAGAACACTTGGAGAAACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116898_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTCCTCCAGGCCG
R:
TCGATGTTTCTCCAAGTGTTCTTCA
Band lengths:
101-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)