HsaEX0040173 @ hg38
Exon Skipping
Gene
ENSG00000116898 | MRPS15
Description
mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
Coordinates
chr1:36457923-36463850:-
Coord C1 exon
chr1:36463806-36463850
Coord A exon
chr1:36461264-36461312
Coord C2 exon
chr1:36457923-36457981
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTGGTTTATCCACAGGGT
3' ss Score
9.77
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCTCCTCCTCCAGGCCGCGCGCGGATATGTCGTCCGGAAACCAG
Seq A exon
GGTTGATGATGTCGTGAAAAGACTCTTGTCTTTGGAAATGGCCAACAAG
Seq C2 exon
TTATTGCCTTGTCTGTCAAGATCCGCAGTTATGAAGAACACTTGGAGAAACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116898_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTCCTCCAGGCCG
R:
TCGATGTTTCTCCAAGTGTTCTTCA
Band lengths:
101-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development