BtaEX6019028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111242795-111247144:+
Coord C1 exon
chr3:111242795-111243044
Coord A exon
chr3:111246680-111246854
Coord C2 exon
chr3:111246953-111247144
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTATTTATTTTTAGAGA
3' ss Score
8.43
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCCAACAGTTGACCCCAGGCTTTCAGCTTTCTCTTGCATCATCTGGCCCAAATGTATCACTTCCTTCAGTTCCAGCTGTAGCTCTTCAGGTTTTTTGCTCTGGTTGTAAAAAAATGCTTTATAAAGGTCAAACTGCATTTCATAAGACAGGATCTACTCAGCTCTTTTGCTCCACAAGGTGCATCATCGGACATTCTTCGTCTGTCTGCCTACTACCTCCTCCCAAGAAAACCTGTGCAAACTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATCACAACCCAATTTGAAAATTCCTCTCCTAGCAAAGATTTCTGCAGCCAATCATGCCTTTCTTCTTATGAGCTGAAGAGAAAACCTGTTGTTACCATATATACCAATAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq C2 exon
ATTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGCGATGCCTGTTTTTCAAAATTTCATTCTACCAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTACTGCTACAGTAGCTCTGGTCCCTGCCAGTCCCAGAAGGTCTTTAGTTCCACAAGTATCATGGCGTATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=46.4),PF064679=zf-FCS=PU(27.3=14.3)
A:
PF064679=zf-FCS=PD(70.5=52.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACAAGGTGCATCATCGG
R:
AAAGACCTTCTGGGACTGGCA
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]