RnoEX0102078 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145149563-145162226:+
Coord C1 exon
chr5:145149563-145149788
Coord A exon
chr5:145154315-145154486
Coord C2 exon
chr5:145162111-145162226
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATTTGTTTTTAGAGA
3' ss Score
8.69
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTTTCAGGTTGGTCTACCATCCCCTGGCCTGAGTGCATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAACAACTGCTTCGTAAGGGGCAGCCTACGTACCGTAAGGCAGGGTCTGCCCAGCTCTTCTGTTCCATGGGATGTGTCATCACGTTCTCCTCAGCGGTCTGCGTGCCTCCTCTTCCCAAGAGAACCTGCGCACACTGCTCCAA
Seq A exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAATTTGAAAATTCCTCTCTCTGCAAAGAGTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCTGCTAAGTGCAGTATGTGTCAGAAGGGCACTGAT
Seq C2 exon
GTATACAGGTTTTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTACCACCTAGCAATGTCAAATGGAACGATTTGCAGCTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=53.9),PF064679=zf-FCS=PU(27.3=15.8)
A:
PF064679=zf-FCS=PD(70.5=53.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCTGAGTGCATCATTT
R:
TACTGAGGGACTGCTGCAGTT
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]