HsaEX0072935 @ hg19
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35480298-35485203:-
Coord C1 exon
chr1:35484954-35485203
Coord A exon
chr1:35480589-35480763
Coord C2 exon
chr1:35480298-35480489
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTATTTATTTTTAGAGA
3' ss Score
8.43
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCCAGCAGTTGAACCCAGGCTTTCAGCTTTCTTTTGCATCATCTGGCCCAAGTGTGTTGCTTCCTTCAGTTCCAGCTGTTGCTATTAAGGTTTTTTGTTCTGGTTGTAAAAAAATGCTTTATAAGGGCCAAACTGCATATCATAAGACAGGATCTACTCAGCTCTTCTGCTCCACACGATGCATCACCAGACATTCTTCACCTGCCTGCCTGCCACCTCCTCCCAAGAAAACCTGCACAAACTGCTCGAA
Seq A exon
AGACATTTTAAATCCTAAGGATGTGATCACAACTCGCTTTGAGAATTCCTATCCTAGCAAAGATTTCTGCAGCCAATCATGCTTGTCATCTTATGAGCTAAAGAAAAAACCTGTTGTTACCATATATACCAAAAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq C2 exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(27.3=14.3),PF060447=DRP=PU(14.1=10.7)
A:
PF064679=zf-FCS=PD(70.5=52.5),PF060447=DRP=PD(84.4=91.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTCCACACGATGCATC
R:
CTTCTGGGATTGGCAAGGACC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)