MmuEX6096160 @ mm10
Exon Skipping
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:127088329-127101964:+
Coord C1 exon
chr4:127088329-127088554
Coord A exon
chr4:127092912-127093083
Coord C2 exon
chr4:127101849-127101964
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATTTGTTTTTAGAGA
3' ss Score
8.69
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGGCCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACCTCTTCCCAAGAGAACCTGTGCACATTGCTCCAA
Seq A exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAGTTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGAT
Seq C2 exon
GTATACAGGTTGTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTATCACCTAGCAATGTCAAATGGAACTATTTGCAGTTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408_MULTIEX1-5/6=3-C2
Average complexity
C2
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(27.3=15.8)
A:
PF064679=zf-FCS=PD(70.5=53.4)
C2:
NO
Main Skipping Isoform:
ENSMUST00000046751fB4753
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCGAGTACATCATTTCC
R:
TGATACTGAGGGACTGCTGCA
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types