MmuEX6096160 @ mm9
Exon Skipping
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:126765573-126778004:+
Coord C1 exon
chr4:126765573-126765798
Coord A exon
chr4:126770156-126770327
Coord C2 exon
chr4:126777854-126778004
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATTTGTTTTTAGAGA
3' ss Score
8.69
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGGCCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACCTCTTCCCAAGAGAACCTGTGCACATTGCTCCAA
Seq A exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAGTTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGAT
Seq C2 exon
AATTTGGCCCCGAAGCCACTCTATGCCTTGGGGAATTCATCGAGGCTGTCTGCTGAAATGATTGAGACTACAAATGACTCAGGAAGAACAGAGCTTTTTTGCTCTATTAACTGCTTATCTGCGTACAGAATTAAGACTGTTATTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408-'10-9,'10-7,12-9=AN
Average complexity
A_C1
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(27.3=15.8)
A:
PF064679=zf-FCS=PD(70.5=53.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCGAGTACATCATTTCC
R:
CCTCGATGAATTCCCCAAGGC
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: