BtaEX6019883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9901659-9907515:+
Coord C1 exon
chr5:9901659-9901776
Coord A exon
chr5:9906713-9906792
Coord C2 exon
chr5:9907474-9907515
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTTTTCATGTGAAGGAT
3' ss Score
7.29
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAATCCAGGCAGCAGTGCCCTACAGGAGGATGTGTGAATGGAAATACGAGCCTTGTGCCACTCCCTGTTTTAAAACCTGCGGTGACCCTGCAGCTCTCGCGTGTAAATTTCTTCCACC
Seq A exon
GATTGAAGGATGCTTTCCCTATTGCCCTAAACATATGATCCTTGATGAAGTCACTCTTAAATGTGTTTATCCAGAAGACT
Seq C2 exon
GCATACCTCTGATTCCCACAGAACCAGCATTAATTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGCCCTACAGGAGG
R:
CTGGTGAAATTAATGCTGGTTCTGT
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]