HsaEX6068036 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80323723-80329119:+
Coord C1 exon
chr12:80323723-80323840
Coord A exon
chr12:80328665-80328744
Coord C2 exon
chr12:80329051-80329119
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTTTTCCATGTAAAGGGT
3' ss Score
6.45
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAATCCAGGCAGCAGTGCCTTACAGGAAGATGTGTGAATGGAGATATGAACCTTGTGCTACACCCTGTTTTAAAACATGTAGTGACCCTGAAGCACTAGCATGTAAATTTCTTCCACC
Seq A exon
GGTTGAAGGATGCTTGCCCTACTGCCCTAAAAATATGATCCTTGATGAGGTCACCCTCAAGTGTGTTTATCCACGAGACT
Seq C2 exon
GTATACCTGTGATTCCCACAGAACCAACATTAATGCCACCAGCTAAGCCAACTGTGCCCATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'43-48,'43-47,44-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTGCCTTACAGGAAG
R:
GCACAGTTGGCTTAGCTGGTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains