HsaEX6068036 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80717503-80722899:+
Coord C1 exon
chr12:80717503-80717620
Coord A exon
chr12:80722445-80722524
Coord C2 exon
chr12:80722831-80722899
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTTTTCCATGTAAAGGGT
3' ss Score
6.45
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAATCCAGGCAGCAGTGCCTTACAGGAAGATGTGTGAATGGAGATATGAACCTTGTGCTACACCCTGTTTTAAAACATGTAGTGACCCTGAAGCACTAGCATGTAAATTTCTTCCACC
Seq A exon
GGTTGAAGGATGCTTGCCCTACTGCCCTAAAAATATGATCCTTGATGAGGTCACCCTCAAGTGTGTTTATCCACGAGACT
Seq C2 exon
GTATACCTGTGATTCCCACAGAACCAACATTAATGCCACCAGCTAAGCCAACTGTGCCCATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTGCCTTACAGGAAG
R:
GCACAGTTGGCTTAGCTGGTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)