DreEX6063917 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6075166-6077450:+
Coord C1 exon
chr18:6075166-6075283
Coord A exon
chr18:6075787-6075866
Coord C2 exon
chr18:6076741-6077450
Length
80 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTGATGTGGCTTAGGGT
3' ss Score
5.04
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
AGAGCAGTTTTGTGATCCCATACCGCTTGATGTGCGAGTGGAAATATCACGCATGCTCCAGTCCGTGTGTGAAGACCTGCAGCGACCTCGATGCCACACGTTGCCATTTTCTACCTCC
Seq A exon
GGTTGAGGGCTGTTTTCCACGATGTCCTAAGACCATGTTGCTGGATGAAGTGACCAGGCGGTGTGTGTACAAAGAAGATT
Seq C2 exon
GTGTGATGCTTTCTCCAACACCAACTCCTTACATGTTTGTAACCCGATCAAATCGCACCACGGCGGCTCCAACCACAGCACCTACAACCACAACTTCAACCACAACGACTCCTTCCACCACGACAGCAACACCAAGCACAGCTCCAACCACAACTTCCAGTACTACAATCATAACTACACCTTCAGAAGCAGCTGTTTTAATAGTCAGCCCGACTACAACCACATTACCCCCAACCACAGTGTCGTCAACAACAGAAACAACCACTTCAACAGAAACGCCCACAACGTCCTCTCCAACCACAGAGCCTCCTCTAATCACCACTGCCCCGCCCACCACATCAGCCACACCCACTACAGCTAAACCCACCACACCTATTACTACAACTTTACCATCATCTACATCCACCACAGAAATGACAACCACATCTGAAGCCACAACCAAACCTGAAACAACCTCTCCGACGACCACAGTCCAGCCAATTACAACCACCACTGTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.903
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(49.1=67.5)
A:
PF0182612=TIL=FE(47.3=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCGTGTGTGAAGACCTG
R:
GTGGTGGAAGGAGTCGTTGTG
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]