RnoEX6031473 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51896432-51900838:+
Coord C1 exon
chr7:51896432-51896549
Coord A exon
chr7:51900282-51900361
Coord C2 exon
chr7:51900797-51900838
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTTCCATTTAAAGGGT
3' ss Score
8.25
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAATCCAGGCAGTGATCCCTTACAGGAGGATGTGTGAGTGGAGATACGAACCTTGTGCTACTCCTTGTTTTAAAACATGCAGTGATCCAGAAGCCCTAGCCTGTACATTCCTTCCACC
Seq A exon
GGTTGAAGGATGTTTACCATATTGCCCCAAGCATATGATCCTGGATGAGGTGACTCTTAAATGTGTTTATCCAGAAGACT
Seq C2 exon
GCATACCACTGACTCCAACAGAACCAGCGTTAGTGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(49.1=67.5)
A:
PF0182612=TIL=FE(49.1=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCAGGCAGTGATCCCTT
R:
CTGGTGGCACTAACGCTGG
Band lengths:
160-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]