GgaEX1041546 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39751927-39755156:+
Coord C1 exon
chr1:39751927-39752044
Coord A exon
chr1:39753553-39753632
Coord C2 exon
chr1:39754570-39755156
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACTACACAATATTTTAAAGGGT
3' ss Score
3
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AACTCAGTGCATCTGTGCCTTACAGGAAGATGTGTGAATGGAGATATGAATCTTGTGCTAATCCTTGCTTTAAAACATGTAGTGATCCTGAAGGAACAGCATGTAAATTCCTTCCTCC
Seq A exon
GGTTGAAGGATGCTTGCCTTATTGTCCCAAAAACATGATCCTTGATGAGGTCACACTTAAATGTGTTTACCCAGAAGACT
Seq C2 exon
GCATACCTGTGAAACCTATGGGATCAGCAACCGGAACAAAACCTTCATTGTTAATCTCTCACCCGGTTGCTACCACAGAGAGATTTCCTACGACACCTCCTATACATGTAACTTCATGGACTGAATCATCTGGTACTGATATGACAGTCAAAATTACCATGAAGACAAACACAACTTTAGCAAGAATGAATATTTCAGCGCAGTCCGTTACAGACTTGTACTCACTGGAAGATGCCACCTATTCAGCATATTCACTTCCAAGTATAGTGGAAACTTCTGATGTACCTCACAGCACTTCAAGTCCTTCTGTCCTTTTCAAACTCATCTCTTCAACAGATTTTCCAGCTGCTTTTCAAGCCTCAGCCATCACACCGTATACTGTCAATTCTAATGCATCTACAACTTTACCCATTCCAATAGCAACTTCAACAACCTTACTCAGTAGAATTCCTCTTCCAACACATTCTATATTATTAACACCCAGTTCCTTTGTTGTAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=PD(48.2=93.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTTACAGGAAGATGTGTG
R:
GGTAGCAACCGGGTGAGAGAT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]