MmuEX6051175 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107235378-107240751:-
Coord C1 exon
chr10:107240634-107240751
Coord A exon
chr10:107235778-107235857
Coord C2 exon
chr10:107235378-107235416
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTTTCCACTAAAAGGGT
3' ss Score
6.11
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAATCCAGGCAGTGGTCCCTTACAGGAGGATGTGCGAGTGGAGATACGAACCTTGTGCTACTCCGTGTTTTAAAACATGCAGTGATCCAGAGGCCTTAGCCTGTACATTCCTTCCACC
Seq A exon
GGTTGAAGGATGCTTGCCATATTGCCCCAAGAATATGATCCTGGATGAGACGACTCTTAAATGTGTTCACCCAGAAGACT
Seq C2 exon
GCATACCACTGTTTCCAACAGAACCAGCATTGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'33-34,'33-33,34-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(49.1=67.5)
A:
PF0182612=TIL=FE(49.1=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCAGTGGTCCCTTACAG
R:
GGTGGCAATGCTGGTTCTGTT
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: