BtaEX6020861 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30458840-30460844:-
Coord C1 exon
chr5:30460710-30460844
Coord A exon
chr5:30459513-30459646
Coord C2 exon
chr5:30458840-30459083
Length
134 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTTGTTCTTTTGCAGGTG
3' ss Score
10.5
5' ss Seq
AAGGTGGAC
5' ss Score
2.93
Exon sequences
Seq C1 exon
GGCTCCCGTTCTGGTGTCTCCTGGATGTGATACCCATAAAGAATGAGAAAGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAAACCAAGAACCGAGGGGGGCCTGACAGCTGGAAGGAGTCAG
Seq A exon
GTGGTGGCCGACGCCGATATGGCCGGGCTGGATCCAAAGGTTTCAATGCCAACCGGCGACGGAGCCGGGCTGTGCTCTACCACCTGTCTGGGCACCTGCAGAAGCAGCCCAAGGGCAAGCACAAGCTCAATAAG
Seq C2 exon
GGGGTGTTTGGGGAGAAGCCAAATCTGCCTGAGTACAAGGTAGCCGCCATCCGGAAGTCGCCCTTCATCCTGCTGCACTGTGGGGCGCTGAGGGCCACTTGGGATGGCTTCATCCTGCTGGCCACCCTCTACGTGGCTGTCACCGTGCCCTACAGCGTGTGCGTGAGCACAGCCCGGGAGCCCAGTGCCGCCCGTGGCCCCCCCAGTGTCTGCGACCTGGCCGTGGAGGTCCTCTTCATTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.333 C2=0.012
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.0=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCTGGTGTCTCCTGGAT
R:
GATGAAGCCATCCCAAGTGGC
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]