RnoEX6033979 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140894714-140896427:+
Coord C1 exon
chr7:140894714-140894848
Coord A exon
chr7:140895644-140895777
Coord C2 exon
chr7:140896184-140896427
Length
134 bp
Sequences
Splice sites
3' ss Seq
GACCCTCTCTTTTGTTGCAGGTG
3' ss Score
12.53
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAACGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
GTGGTGGCCGACGCAGATATGGTCGGGCAGGATCCAAAGGCTTTAATGCCAATCGGAGGCGCAGCCGGGCGGTTCTCTACCACCTCTCTGGTCACCTGCAGAAACAACCCAAGGGCAAGCACAAACTCAATAAG
Seq C2 exon
GGTGTGTTTGGAGAGAAGCCAAATTTGCCCGAATATAAAGTCGCTGCTATCCGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTCGCCACGCTCTACGTGGCTGTCACTGTGCCATACAGCGTGTGTGTGAGCACAGCACGGGAGCCCAGTGCTGCCCGTGGCCCACCTAGTGTCTGTGACCTGGCCGTGGAAGTCCTCTTCATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-'6-6,'6-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.333 C2=0.012
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.0=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTTCCTGGTCTCTCACA
R:
TGCTCACACACACGCTGTATG
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]