DreEX0040879 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28157520-28164853:-
Coord C1 exon
chr9:28164719-28164853
Coord A exon
chr9:28159568-28159707
Coord C2 exon
chr9:28157520-28157772
Length
140 bp
Sequences
Splice sites
3' ss Seq
TATGGATGTGCTCTGTGCAGACG
3' ss Score
6.09
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAACTCAGTTCTGGTGTCTTCTGGATATCGTGCCCATTAAGAATGAGAAGGGAGAGGTGGTGCTCTTTCTAGTGTCACACAAGGACATTACAGACAACAAGAAAGACCAAGATGAAGAGCAGAGCCCAGAAAGAG
Seq A exon
ACGAGGAGACGGGGTTGGAGGTGCACAAGGTCACACGGCCACCGGGCTTCAATGCCAACCGGCGGCGCAGTAGAGCTGTGCTTTACCAGCTGTCTGGACACTTGCAGAAACAAGACAAGAGCAAACTCAAGATCAATAAT
Seq C2 exon
AACATGTTTGGCGAGAAGCCGCCCATACCAGAGTACAAAGTGGCAGCCATTCAGAAAAGCCGTTTCATTCTTCTCCATTACGGCACCTTCAAAGCAGGCTGGGATTGGCTCATCCTGTTAGCAACCTTTTATGTAGCAGTTACTGTGCCCTACAATGTCTGTTTCACCGTCGTTGGAGGGCGAGATGAAGCATCAACCCCTAGAAGTCCACCGAGTGTGAGCGACATTCTGGTGGAAATTCTTTTCATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=67.4)
A:
NO
C2:
PF0052026=Ion_trans=PU(4.4=14.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATGAAGAGCAGAGCCC
R:
CTCGGTGGACTTCTAGGGGTT
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]